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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
103
ATAC-seq
103
total RNA-seq
70
single cell RNA-seq
41
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
173
Transcription
123
DNA accessibility
47
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
40
September, 2018
33
April, 2018
33
July, 2018
February, 2021
20
May, 2021
19
September, 2020
14
June, 2019
13
July, 2019
11
October, 2019
7
August, 2020
6
December, 2019
6
November, 2020
5
March, 2020
5
September, 2017
3
August, 2017
3
August, 2018
3
November, 2019
3
October, 2022
2
August, 2021
2
October, 2018
1
June, 2018
Available data
179
fastq
172
bigWig
160
bam
122
tsv
80
zippedFastqFolder
54
bed narrowPeak
40
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
360
Homo sapiens
Biosample type
308
primary cell
38
cell line
15
tissue
in vitro differentiated cells
Organ
696
pancreas
361
epithelium
294
kidney
236
liver
198
heart
74
vasculature
71
blood vessel
68
brain
57
musculature of body
56
eye
54
connective tissue
50
limb
47
artery
31
adipose tissue
20
lung
18
ureter
9
blood
9
bodily fluid
9
bone element
8
embryo
8
nerve
8
skeleton
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
213
AMP
146
HPAP
2
T1D
Genome assembly (visualization)
182
hg19
169
GRCh38
Lab
209
AMP-T2D consortium
146
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
39
inconsistent ontology term
5
audit script error
month_released!
February, 2021
assay_title!
ChIP-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
361 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
35
52
12
25
1
pancreatic beta cell
23
21
12
16
1
pancreatic acinar cell
9
4
12
1
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
+ See 19 more…
cell line
EndoC_BH1
19
7
1
6
2
1
glomerular visceral epithelial cell
1
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
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