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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
129
single cell RNA-seq
88
ChIP-seq
60
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
326
Transcription
109
DNA accessibility
88
DNA binding
41
DNA methylation
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
Available data
196
bigWig
186
bam
153
zippedFastqFolder
124
fastq
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
585
Homo sapiens
Biosample type
480
primary cell
97
tissue
9
cell line
Organ
177
pancreas
147
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
276
HPAP
244
T1D
47
KPMP
19
LungMap
community
Genome assembly (visualization)
196
GRCh38
186
hg19
Lab
276
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
month_released!
February, 2021
assay_title!
Hi-C
award.project!
community
AMP
BIOSAMPLE
ASSAY
586 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
25
Langerhans cell
73
21
pancreatic beta cell
11
16
16
exocrine cell
39
+ See 36 more…
tissue
kidney
47
islet of Langerhans
7
2
11
6
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
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