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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
12
total RNA-seq
6
ATAC-seq
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
15
Transcription
8
DNA accessibility
Date released
February, 2021
12
July, 2019
2
February, 2020
1
August, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
18
bigWig
17
bam
15
tsv
6
bed narrowPeak
4
bigBed narrowPeak
4
fastq
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
25
Homo sapiens
Biosample type
23
tissue
2
primary cell
1
in vitro differentiated cells
Organ
651
pancreas
322
epithelium
294
kidney
231
liver
191
heart
72
vasculature
70
connective tissue
69
blood vessel
68
brain
56
eye
56
musculature of body
49
limb
47
artery
26
adipose tissue
20
lung
18
ureter
15
embryo
9
blood
9
bodily fluid
9
bone element
8
nerve
8
skeleton
5
vein
3
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
21
hg19
18
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2021
assay_title!
WGBS
ChIP-seq
BIOSAMPLE
ASSAY
26 results
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total RNA-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
omental fat pad
5
1
1
2
subcutaneous adipose tissue
5
1
1
1
adipose tissue
1
3
1
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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