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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1544
ChIP-seq
742
total RNA-seq
310
ATAC-seq
181
DNase-seq
170
single cell RNA-seq
39
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
310
DNA accessibility
Date released
91
February, 2023
76
August, 2021
38
May, 2022
26
November, 2019
February, 2021
21
May, 2021
20
October, 2019
11
May, 2023
8
October, 2017
6
July, 2019
4
March, 2019
4
March, 2020
3
January, 2018
2
August, 2017
Available data
222
bed narrowPeak
74
bam
64
xls
58
bigWig
29
fastq
10
bed bed3
5
bigBed narrowPeak
4
bed bed3+
3
bed bedgraph
3
txt
2
bed broadPeak
2
tsv
Organism
310
Homo sapiens
Biosample type
252
tissue
primary cell
38
in vitro differentiated cells
20
cell line
Organ
81
pancreas
75
kidney
39
heart
38
blood vessel
38
vasculature
37
artery
31
epithelium
28
eye
21
liver
19
connective tissue
6
adipose tissue
4
bone element
4
brain
4
skeleton
2
limb
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
299
AMP
11
T1D
Genome assembly (visualization)
168
GRCh38
156
hg19
Lab
171
AMP-T2D consortium
75
Katalin Susztak, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
inconsistent ontology term
month_released!
February, 2021
biosample_type!
primary cell
BIOSAMPLE
ASSAY
310 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
68
coronary artery
36
liver
20
retina
15
+ See 21 more…
in vitro differentiated cells
neural progenitor cell
10
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
adipocyte
4
+ See 7 more…
cell line
EndoC_BH1
19
GM12878
1
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