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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
171
DNA binding
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
334
November, 2017
176
October, 2019
171
August, 2017
123
May, 2021
97
May, 2019
72
December, 2017
65
April, 2019
63
November, 2018
45
October, 2018
40
May, 2024
32
September, 2018
30
August, 2021
30
December, 2018
27
May, 2020
23
June, 2019
21
January, 2019
16
February, 2018
11
November, 2019
6
October, 2017
February, 2021
3
March, 2020
Available data
181
bam
181
fastq
171
bigWig
132
bed narrowPeak
85
tagAlign
39
bed broadPeak
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
Organism
165
Homo sapiens
Biosample type
83
tissue
47
in vitro differentiated cells
41
primary cell
Organ
65
pancreas
61
connective tissue
17
liver
14
adipose tissue
14
epithelium
13
musculature of body
Project
171
AMP
Genome assembly (visualization)
171
hg19
149
GRCh38
Lab
171
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2021
BIOSAMPLE
ASSAY
171 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
27
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
47
primary cell
skeletal muscle myoblast
15
pancreatic endocrine cell
12
pancreatic alpha cell
7
pancreatic beta cell
7
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