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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
small RNA-seq
2
ATAC-seq
1
WGBS
Assay category
360
DNA binding
Target of assay
286
transcription factor
81
recombinant protein
70
histone modification
69
histone
51
RNA binding protein
41
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
217
November, 2017
50
December, 2017
48
November, 2018
19
May, 2020
18
August, 2017
5
October, 2019
3
August, 2021
Available data
360
bam
359
bed narrowPeak
359
bigWig
333
fastq
320
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
31
tagAlign
6
bed bed3+
Organism
360
Homo sapiens
Biosample type
261
cell line
82
tissue
14
in vitro differentiated cells
3
primary cell
Organ
360
liver
171
brain
157
pancreas
109
heart
97
epithelium
75
connective tissue
71
vasculature
69
blood vessel
54
blood
54
bodily fluid
47
limb
39
kidney
24
nerve
21
artery
18
adipose tissue
15
embryo
13
musculature of body
12
spleen
10
vein
2
eye
1
pituitary gland
Project
360
AMP
Genome assembly (visualization)
429
hg19
360
GRCh38
Lab
360
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
month_released!
February, 2021
BIOSAMPLE
ASSAY
360 results
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Clear Filters
ChIP-seq
cell line
HepG2
261
tissue
liver
75
right lobe of liver
7
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
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