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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1863
ChIP-seq
988
total RNA-seq
509
ATAC-seq
345
single cell RNA-seq
212
DNase-seq
69
WGBS
57
snATAC-seq
55
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
February, 2021
5
August, 2021
2
December, 2019
Available data
2
bed bed3+
2
tsv
Organism
6
Homo sapiens
Biosample type
3
tissue
2
cell line
2
in vitro differentiated cells
Organ
3
connective tissue
3
epithelium
2
kidney
2
pancreas
1
adipose tissue
Project
7
AMP
Genome assembly (visualization)
2
hg19
Lab
5
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
audit script error
2
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
7 results
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Capture-C
RNA microarray
tissue
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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