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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1727
ChIP-seq
979
total RNA-seq
471
ATAC-seq
339
single cell RNA-seq
201
DNase-seq
67
WGBS
57
snATAC-seq
54
pCHi-C
29
Hi-C
20
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
67
DNA methylation
Date released
41
May, 2022
10
July, 2019
9
August, 2017
7
November, 2018
February, 2021
Available data
41
zippedFastqFolder
16
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
11
fastq
Organism
67
Homo sapiens
Biosample type
41
primary cell
25
tissue
1
cell line
Organ
45
pancreas
41
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
vasculature
1
limb
1
musculature of body
Project
41
HPAP
26
AMP
Genome assembly (visualization)
16
GRCh38
Lab
41
Klaus Kaestner, Upenn
26
AMP-T2D consortium
month_released!
February, 2021
organ_slims!
vasculature
BIOSAMPLE
ASSAY
67 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
+ See 7 more…
cell line
HepG2
1
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