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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
WGBS
19
RRBS
1
DNAme array
Assay category
1764
DNA binding
1260
Transcription
737
DNA accessibility
89
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
25
July, 2019
15
August, 2017
7
November, 2018
February, 2021
1
May, 2021
Available data
41
zippedFastqFolder
34
bed bedMethyl
34
bigBed bedMethyl
18
bam
17
bigWig
15
fastq
Organism
89
Homo sapiens
Biosample type
50
primary cell
38
tissue
1
cell line
Organ
47
pancreas
46
epithelium
9
heart
7
liver
6
adipose tissue
6
connective tissue
6
musculature of body
3
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
48
AMP
41
HPAP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
48
AMP-T2D consortium
41
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
month_released!
February, 2021
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
89 results
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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
+ See 6 more…
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
+ See 13 more…
cell line
HepG2
1
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