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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
387
ChIP-seq
Assay category
387
DNA binding
Target of assay
321
histone
321
histone modification
174
narrow histone mark
147
broad histone mark
65
control
1
transcription factor
Date released
87
May, 2021
85
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
February, 2021
Available data
2652
bam
2470
bigWig
1731
bed narrowPeak
1302
fastq
1018
bigBed narrowPeak
935
tsv
387
tagAlign
318
bed broadPeak
281
bigBed broadPeak
265
bed bed3+
153
zippedFastqFolder
71
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
10
bed bed3
5
hdf5
4
tar
3
cool
2
bed bedgraph
2
csv
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
380
Homo sapiens
Biosample type
238
tissue
100
primary cell
37
in vitro differentiated cells
12
cell line
Organ
118
brain
86
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
1
pituitary gland
Project
303
AMP
84
T1D
Genome assembly (visualization)
238
GRCh38
230
hg19
Lab
303
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
February, 2021
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
387 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
pancreatic PP cell
3
cell line
HepG2
12
See all biosamples
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