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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
4
ATAC-seq
1
Capture-C
1
DNase-seq
1
total RNA-seq
Assay category
67
DNA binding
5
DNA accessibility
1
Transcription
Target of assay
37
histone
37
histone modification
22
transcription factor
20
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
February, 2021
2
August, 2021
2
February, 2023
2
October, 2019
Available data
54
bam
54
fastq
51
bigWig
44
bed narrowPeak
14
tagAlign
9
bed bed3+
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
74
Homo sapiens
Biosample type
74
in vitro differentiated cells
Organ
74
connective tissue
Project
74
AMP
Genome assembly (visualization)
54
hg19
49
GRCh38
Lab
72
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
February, 2021
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
ATAC-seq
Capture-C
DNase-seq
total RNA-seq
in vitro differentiated cells
adipocyte
67
4
1
1
1
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