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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
whole genome sequencing assay
Assay category
42
DNA binding
30
Transcription
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
31
August, 2021
28
August, 2017
3
July, 2019
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
1
November, 2017
Available data
bam
622
bigWig
465
fastq
440
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
hdf5
1
vcf
Organism
108
Homo sapiens
Biosample type
72
tissue
34
cell line
2
primary cell
Organ
251
pancreas
202
kidney
201
epithelium
182
heart
108
liver
86
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
9
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
108
AMP
Genome assembly (visualization)
39
hg19
Lab
40
Karen Mohlke, UNC
37
AMP-T2D consortium
31
Bing Ren, UCSD
month_released!
February, 2021
biosample_type!
stem cell
files.file_type!
bam
BIOSAMPLE
ASSAY
108 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
RRBS
STARR-seq
pCHi-C
DNase-seq
whole genome sequencing assay
tissue
liver
23
20
20
1
3
1
1
right lobe of liver
1
1
1
cell line
HepG2
19
9
2
2
1
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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