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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
26
total RNA-seq
1
Hi-C
1
WGBS
Assay category
406
DNA binding
26
Transcription
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
351
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
18
October, 2019
12
November, 2019
5
March, 2020
5
May, 2021
Available data
484
bam
434
bigWig
427
fastq
387
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
40
tsv
12
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
434
Homo sapiens
Biosample type
1104
tissue
504
primary cell
434
cell line
224
in vitro differentiated cells
3
stem cell
Organ
332
liver
54
blood
54
bodily fluid
27
pancreas
21
epithelium
11
kidney
8
embryo
Project
430
AMP
4
T1D
Genome assembly (visualization)
429
hg19
369
GRCh38
Lab
420
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
30
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
February, 2021
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
434 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
GM12878
54
EndoC_BH1
13
7
H1-hESC
8
Panc1
6
1
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