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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ChIP-seq
18
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
393
DNA binding
18
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
350
transcription factor
88
recombinant protein
62
RNA binding protein
30
chromatin remodeller
25
histone
25
histone modification
13
control
13
narrow histone mark
12
broad histone mark
2
other context
2
other post-translational modification
Date released
268
November, 2017
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
18
October, 2019
2
March, 2020
1
January, 2018
Available data
462
bam
427
fastq
415
bigWig
375
bed narrowPeak
354
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
32
tsv
12
tagAlign
3
tar
2
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
415
Homo sapiens
Biosample type
1328
tissue
415
cell line
380
primary cell
217
in vitro differentiated cells
3
stem cell
Organ
332
liver
55
blood
55
bodily fluid
30
pancreas
epithelium
12
kidney
8
embryo
Project
415
AMP
Genome assembly (visualization)
410
hg19
349
GRCh38
Lab
401
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
February, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
415 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
GM12878
54
1
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
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