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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
593
total RNA-seq
312
ChIP-seq
168
single cell RNA-seq
52
ATAC-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
RNA microarray
1
DNase-seq
Assay category
777
Transcription
312
DNA binding
81
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
187
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
February, 2021
218
August, 2017
166
May, 2020
165
August, 2021
120
July, 2018
91
October, 2019
70
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
20
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
12
December, 2017
11
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1455
bam
1328
bigWig
bed narrowPeak
624
tsv
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1253
Homo sapiens
Biosample type
1256
tissue
746
primary cell
in vitro differentiated cells
176
cell line
8
stem cell
Organ
382
pancreas
247
liver
140
heart
138
kidney
90
connective tissue
89
adipose tissue
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
bone element
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1161
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
534
hg19
532
GRCh38
Lab
1046
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
audit script error
3
inconsistent ontology term
Audit category:
22
missing controlled_by
month_released!
February, 2021
biosample_type!
in vitro differentiated cells
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
1256 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
RNA microarray
DNase-seq
tissue
islet of Langerhans
298
51
31
7
4
3
1
4
liver
167
63
3
1
1
1
1
kidney
49
7
59
11
6
1
1
subcutaneous abdominal adipose tissue
35
3
heart left ventricle
3
6
18
4
1
1
1
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