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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
ChIP-seq
458
total RNA-seq
161
DNase-seq
109
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
1
snATAC-seq
Assay category
529
DNA binding
474
Transcription
275
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
February, 2021
180
August, 2017
170
May, 2020
163
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
28
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1203
bigWig
1196
bam
769
bed narrowPeak
493
bigBed narrowPeak
474
tsv
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1292
Homo sapiens
Biosample type
1298
tissue
625
primary cell
437
cell line
266
in vitro differentiated cells
3
stem cell
Organ
413
pancreas
268
liver
142
brain
113
heart
92
kidney
90
limb
70
blood vessel
70
vasculature
61
musculature of body
38
adipose tissue
38
connective tissue
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
1
pericardium
1
pituitary gland
Project
1296
AMP
2
T1D
Genome assembly (visualization)
1407
GRCh38
1298
hg19
Lab
1255
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
1298 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
31
266
1
42
2
1
1
liver
83
147
2
20
1
1
1
heart left ventricle
29
3
3
2
1
1
body of pancreas
26
2
2
4
2
kidney
20
13
1
1
1
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