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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
103
total RNA-seq
28
ATAC-seq
9
DNase-seq
8
WGBS
3
RRBS
2
FAIRE-seq
Assay category
200
DNA binding
103
Transcription
39
DNA accessibility
11
DNA methylation
Target of assay
73
transcription factor
68
histone modification
67
histone
59
control
41
broad histone mark
26
narrow histone mark
15
RNA binding protein
2
chromatin remodeller
Date released
175
August, 2017
58
October, 2018
48
December, 2017
24
May, 2022
17
November, 2018
16
October, 2017
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1431
bam
1312
bigWig
962
bed narrowPeak
623
tsv
548
bigBed narrowPeak
353
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
68
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
346
Homo sapiens
Biosample type
427
cell line
364
primary cell
353
tissue
141
in vitro differentiated cells
4
stem cell
Organ
213
pancreas
83
liver
43
adipose tissue
43
connective tissue
spleen
12
brain
2
musculature of body
Project
353
AMP
Genome assembly (visualization)
280
hg19
264
GRCh38
Lab
327
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
organ_slims!
spleen
BIOSAMPLE
ASSAY
353 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
103
20
1
1
liver
67
2
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
omental fat pad
11
1
1
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