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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
879
ChIP-seq
592
total RNA-seq
251
ATAC-seq
168
single cell RNA-seq
27
WGBS
27
snATAC-seq
25
pCHi-C
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
2
DNase-seq
Assay category
879
DNA binding
776
Transcription
284
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
616
histone modification
615
histone
318
narrow histone mark
297
broad histone mark
184
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
258
August, 2017
238
October, 2019
227
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
Available data
1455
bam
1328
bigWig
976
bed narrowPeak
623
tsv
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
tagAlign bed3+
Organism
2014
Homo sapiens
Biosample type
2023
tissue
1004
primary cell
530
cell line
343
in vitro differentiated cells
7
stem cell
Organ
474
pancreas
354
liver
286
heart
238
brain
223
kidney
128
blood vessel
128
vasculature
97
connective tissue
96
adipose tissue
80
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
20
lung
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1926
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1202
GRCh38
1112
hg19
Lab
1675
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
3
audit script error
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
lab.title!
Bing Ren, UCSD
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
2023 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
DNase-seq
tissue
islet of Langerhans
50
297
67
7
4
1
1
1
4
1
liver
142
167
20
3
1
1
1
1
kidney
27
49
75
59
6
1
1
1
heart left ventricle
35
3
2
18
4
1
1
1
left cardiac atrium
40
18
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