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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
252
ATAC-seq
28
snATAC-seq
15
DNase-seq
4
FAIRE-seq
Assay category
907
DNA binding
777
Transcription
299
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
June, 2019
81
February, 2023
70
August, 2021
39
May, 2022
20
November, 2019
20
October, 2019
11
May, 2023
10
April, 2020
10
November, 2018
February, 2021
8
January, 2021
8
July, 2019
8
October, 2017
5
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
218
bed narrowPeak
74
bam
64
xls
61
bigWig
41
fastq
21
bigBed narrowPeak
15
bed broadPeak
14
bed bed3+
13
bigBed broadPeak
5
bed bed3
1
tsv
1
txt
Organism
298
Homo sapiens
Biosample type
299
tissue
236
primary cell
39
in vitro differentiated cells
22
cell line
Organ
82
kidney
78
pancreas
40
blood vessel
40
vasculature
39
artery
39
heart
28
eye
25
liver
12
epithelium
10
lung
7
adipose tissue
7
brain
7
connective tissue
6
limb
4
bone element
4
skeleton
3
nerve
2
musculature of body
2
spleen
1
pituitary gland
1
skin of body
Project
268
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
164
GRCh38
133
hg19
Lab
144
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
1
inconsistent ontology term
month_released!
February, 2021
June, 2019
BIOSAMPLE
ASSAY
299 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
68
7
1
1
coronary artery
36
liver
20
2
retina
15
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