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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1105
ChIP-seq
707
total RNA-seq
290
ATAC-seq
170
single cell RNA-seq
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
DNase-seq
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
RNA microarray
2
Capture-C
Assay category
1105
DNA binding
893
Transcription
338
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
740
histone modification
739
histone
379
narrow histone mark
359
broad histone mark
224
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
February, 2021
352
August, 2017
271
August, 2021
250
October, 2019
193
May, 2020
172
May, 2021
June, 2019
120
July, 2018
115
May, 2019
111
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
1561
bam
1402
bigWig
945
bed narrowPeak
733
tsv
518
fastq
415
bigBed narrowPeak
278
tagAlign
71
txt
67
bed bed3+
64
xls
51
bed broadPeak
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
14
bigBed broadPeak
10
bed bed3
3
bed bedgraph
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2428
Homo sapiens
Biosample type
2069
tissue
985
primary cell
566
cell line
368
in vitro differentiated cells
10
stem cell
Organ
504
pancreas
375
liver
287
heart
240
brain
223
kidney
191
connective tissue
130
blood vessel
130
vasculature
102
adipose tissue
84
limb
71
artery
53
eye
50
musculature of body
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2340
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1487
GRCh38
1427
hg19
4
hg18
Lab
2031
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
103
inconsistent ontology term
27
inconsistent control
6
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
June, 2019
BIOSAMPLE
ASSAY
2437 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
snATAC-seq
WGBS
Hi-C
DNase-seq
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
RNA microarray
Capture-C
tissue
islet of Langerhans
71
298
68
4
7
3
1
1
1
4
liver
145
167
20
1
3
1
2
1
1
kidney
27
49
75
59
6
1
1
1
heart left ventricle
35
3
2
18
1
4
1
1
left cardiac atrium
40
18
+ See 145 more…
in vitro differentiated cells
adipocyte
67
1
4
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 31 more…
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