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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
722
ChIP-seq
463
total RNA-seq
56
ATAC-seq
17
WGBS
16
small RNA-seq
14
DNase-seq
4
FAIRE-seq
Assay category
722
DNA binding
479
Transcription
74
DNA accessibility
17
DNA methylation
Target of assay
466
histone modification
465
histone
243
narrow histone mark
222
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
February, 2021
193
May, 2020
186
October, 2019
170
August, 2017
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1292
bam
1165
bigWig
813
bed narrowPeak
624
tsv
398
bigBed narrowPeak
377
fastq
238
tagAlign
68
txt
64
xls
50
bed broadPeak
42
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1285
Homo sapiens
Biosample type
1292
tissue
551
primary cell
487
cell line
269
in vitro differentiated cells
3
stem cell
Organ
425
pancreas
288
liver
201
brain
105
heart
84
blood vessel
84
vasculature
76
limb
53
adipose tissue
53
connective tissue
42
nerve
32
artery
30
kidney
24
spleen
12
musculature of body
1
pituitary gland
Project
1290
AMP
2
T1D
Genome assembly (visualization)
1088
GRCh38
1049
hg19
Lab
1267
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
June, 2019
BIOSAMPLE
ASSAY
1292 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
30
272
38
1
1
liver
122
147
1
2
body of pancreas
35
2
4
2
2
2
tibial nerve
35
4
1
2
heart left ventricle
34
3
2
2
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