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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
731
ChIP-seq
504
total RNA-seq
250
ATAC-seq
168
single cell RNA-seq
28
snATAC-seq
25
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
13
DNase-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
RNA microarray
Assay category
731
DNA binding
688
Transcription
294
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
158
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1122
bam
987
bigWig
747
bed narrowPeak
535
tsv
376
bigBed narrowPeak
202
fastq
179
tagAlign
68
txt
64
xls
24
bed broadPeak
20
bed bedMethyl
20
bigBed bedMethyl
16
bed bed3+
13
bigBed broadPeak
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1783
Homo sapiens
Biosample type
1785
tissue
926
primary cell
566
cell line
300
in vitro differentiated cells
10
stem cell
Organ
354
pancreas
306
liver
286
heart
240
brain
223
kidney
130
blood vessel
130
vasculature
84
limb
71
artery
53
eye
45
connective tissue
44
adipose tissue
43
nerve
25
spleen
24
musculature of body
20
lung
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1688
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1086
GRCh38
976
hg19
Lab
1433
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
February, 2021
June, 2019
August, 2017
BIOSAMPLE
ASSAY
1785 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
DNase-seq
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
tissue
islet of Langerhans
29
209
68
7
4
3
1
4
liver
97
167
20
1
1
1
2
kidney
27
49
75
59
6
1
1
1
heart left ventricle
35
3
2
18
1
4
1
1
left cardiac atrium
40
18
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