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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
2
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
25
bigWig
19
bed narrowPeak
15
tagAlign
13
bed broadPeak
12
bam
7
tsv
6
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
50
Homo sapiens
Biosample type
50
tissue
3
primary cell
Organ
501
pancreas
360
liver
286
heart
240
brain
223
kidney
130
blood vessel
130
vasculature
102
connective tissue
101
adipose tissue
84
limb
71
artery
53
eye
50
musculature of body
43
nerve
25
spleen
20
lung
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
29
hg19
10
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
February, 2021
June, 2019
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
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