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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
167
single cell RNA-seq
109
total RNA-seq
64
ATAC-seq
27
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
1
DNase-seq
Assay category
317
DNA binding
276
Transcription
96
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
126
August, 2017
February, 2021
81
October, 2019
May, 2022
60
February, 2023
47
September, 2023
31
March, 2020
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
180
bam
151
tsv
122
tagAlign
73
fastq
63
bed narrowPeak
61
txt
40
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
5
bed bed3
1
bedpe
Organism
756
Homo sapiens
Biosample type
759
tissue
372
primary cell
194
cell line
125
in vitro differentiated cells
7
stem cell
Organ
126
kidney
122
heart
95
pancreas
82
liver
67
connective tissue
66
adipose tissue
62
brain
53
eye
38
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
664
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1264
hg19
Lab
589
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
audit script error
3
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
February, 2021
May, 2022
assembly!
GRCh38
BIOSAMPLE
ASSAY
759 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
RNA microarray
DNase-seq
tissue
kidney
7
59
49
6
1
1
1
islet of Langerhans
46
26
28
7
4
3
1
1
4
liver
70
1
1
1
3
subcutaneous abdominal adipose tissue
36
3
heart left ventricle
7
18
1
1
1
2
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