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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
712
ChIP-seq
545
total RNA-seq
198
ATAC-seq
174
DNase-seq
167
single cell RNA-seq
27
WGBS
27
snATAC-seq
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
728
Transcription
712
DNA binding
403
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
459
histone
264
broad histone mark
195
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1245
bam
1148
bigWig
787
bed narrowPeak
616
tsv
514
bigBed narrowPeak
353
fastq
209
bed broadPeak
200
bed bed3+
189
tagAlign
172
bigBed broadPeak
64
xls
61
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
Organism
1915
Homo sapiens
Biosample type
1924
tissue
872
primary cell
536
cell line
360
in vitro differentiated cells
10
stem cell
Organ
478
pancreas
314
liver
305
heart
287
kidney
179
brain
107
blood vessel
107
vasculature
101
adipose tissue
101
connective tissue
80
musculature of body
47
artery
47
limb
35
eye
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1827
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1246
GRCh38
1101
hg19
Lab
1636
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
5
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
May, 2022
October, 2019
BIOSAMPLE
ASSAY
1924 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
50
278
37
1
7
3
1
1
4
liver
140
146
2
3
1
1
1
1
kidney
23
49
75
13
59
6
1
1
1
heart left ventricle
35
3
2
3
18
4
1
1
1
left cardiac atrium
40
1
18
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