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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
51
ATAC-seq
27
DNase-seq
17
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
123
DNA binding
111
Transcription
78
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
50
February, 2023
40
May, 2024
27
June, 2019
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
1
December, 2019
Available data
185
bed narrowPeak
157
bigWig
132
bam
114
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
328
Homo sapiens
Biosample type
412
primary cell
328
tissue
53
cell line
25
in vitro differentiated cells
Organ
505
pancreas
360
liver
313
heart
291
kidney
265
brain
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
328
AMP
Genome assembly (visualization)
191
GRCh38
125
hg19
Lab
288
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
audit script error
month_released!
February, 2021
BIOSAMPLE
ASSAY
328 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RNA microarray
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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