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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
28
ChIP-seq
4
total RNA-seq
2
single cell RNA-seq
Assay category
37
DNA accessibility
28
DNA binding
6
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
February, 2021
35
February, 2023
24
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
62
bed narrowPeak
36
bam
29
bigWig
25
bigBed narrowPeak
6
tsv
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
71
Homo sapiens
Biosample type
69
tissue
2
primary cell
Organ
885
pancreas
776
liver
471
epithelium
268
kidney
257
heart
251
brain
203
connective tissue
157
vasculature
153
blood vessel
99
adipose tissue
80
limb
71
artery
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
60
GRCh38
25
hg19
Lab
71
AMP-T2D consortium
month_released!
February, 2021
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
71 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
tissue
coronary artery
36
5
1
tibial artery
1
23
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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