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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
38
ATAC-seq
9
total RNA-seq
6
single cell RNA-seq
3
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
93
DNA binding
39
DNA accessibility
15
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
19
control
4
RNA binding protein
4
transcription factor
Date released
February, 2021
50
May, 2019
43
October, 2019
35
February, 2023
9
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
3
November, 2017
Available data
117
bed narrowPeak
114
bam
94
bigWig
79
bigBed narrowPeak
16
tsv
13
bed broadPeak
13
bigBed broadPeak
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
153
Homo sapiens
Biosample type
128
tissue
25
primary cell
Organ
885
pancreas
776
liver
471
epithelium
268
kidney
257
heart
251
brain
203
connective tissue
157
vasculature
153
blood vessel
99
adipose tissue
80
limb
71
artery
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
153
AMP
Genome assembly (visualization)
114
GRCh38
85
hg19
Lab
153
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
February, 2021
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
153 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
1
tibial artery
23
1
1
aorta
13
1
4
1
2
1
thoracic aorta
16
1
2
ascending aorta
16
2
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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