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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
ChIP-seq
Assay category
333
DNA binding
Target of assay
264
histone
264
histone modification
149
narrow histone mark
115
broad histone mark
65
control
4
transcription factor
Date released
90
May, 2021
61
November, 2017
50
May, 2020
49
October, 2019
48
August, 2017
24
August, 2021
11
October, 2017
February, 2021
Available data
2820
bam
2578
bigWig
1754
bed narrowPeak
1313
fastq
1042
bigBed narrowPeak
1041
tsv
390
tagAlign
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
332
Homo sapiens
Biosample type
203
tissue
89
primary cell
40
in vitro differentiated cells
1
cell line
Organ
109
brain
75
liver
21
connective tissue
7
adipose tissue
7
epithelium
7
pancreas
2
musculature of body
1
pituitary gland
Project
249
AMP
84
T1D
Genome assembly (visualization)
207
GRCh38
176
hg19
Lab
249
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
month_released!
February, 2021
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
333 results
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Clear Filters
ChIP-seq
tissue
liver
70
layer of hippocampus
15
substantia nigra
15
caudate nucleus
14
cingulate gyrus
12
+ See 43 more…
primary cell
monocyte
84
hepatocyte
4
skeletal muscle myoblast
1
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
1
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