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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
326
ChIP-seq
Assay category
326
DNA binding
Target of assay
260
histone
260
histone modification
146
narrow histone mark
114
broad histone mark
63
control
3
transcription factor
Date released
87
May, 2021
61
November, 2017
50
May, 2020
49
October, 2019
48
August, 2017
20
August, 2021
11
October, 2017
February, 2021
Available data
2529
bam
2343
bigWig
1643
bed narrowPeak
1062
fastq
966
bigBed narrowPeak
917
tsv
383
tagAlign
bed broadPeak
263
bigBed broadPeak
250
bed bed3+
73
zippedFastqFolder
72
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
10
bed bed3
3
bed bedgraph
3
hdf5
3
tar
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
325
Homo sapiens
Biosample type
203
tissue
85
primary cell
37
in vitro differentiated cells
1
cell line
Organ
109
brain
75
liver
21
connective tissue
7
adipose tissue
epithelium
7
pancreas
2
musculature of body
1
pituitary gland
Project
242
AMP
84
T1D
Genome assembly (visualization)
202
GRCh38
171
hg19
Lab
242
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
month_released!
February, 2021
files.file_type!
bed broadPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
326 results
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Clear Filters
ChIP-seq
tissue
liver
70
layer of hippocampus
15
substantia nigra
15
caudate nucleus
14
cingulate gyrus
12
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
1
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
cell line
HepG2
1
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