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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
73
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
3
Hi-C
Assay category
165
Transcription
60
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
56
September, 2020
February, 2021
3
October, 2022
Available data
153
zippedFastqFolder
124
fastq
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
269
Homo sapiens
Biosample type
269
primary cell
Organ
136
epithelium
136
pancreas
Project
269
HPAP
Genome assembly (visualization)
3
hg19
Lab
934
AMP-T2D consortium
269
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
123
Kyle Gaulton, UCSD
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
3
audit script error
month_released!
February, 2021
files.file_type!
bigWig
BIOSAMPLE
ASSAY
269 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
73
21
pancreatic alpha cell
42
25
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
pancreatic acinar cell
4
1
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