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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
209
ATAC-seq
168
single cell RNA-seq
136
total RNA-seq
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
RNA microarray
1
DNase-seq
Assay category
304
Transcription
267
DNA binding
238
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
175
control
93
histone
93
histone modification
48
narrow histone mark
45
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
229
August, 2021
106
August, 2017
February, 2021
95
February, 2023
82
October, 2019
47
September, 2023
46
May, 2022
29
March, 2020
29
October, 2018
25
February, 2020
November, 2017
23
May, 2020
22
May, 2019
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1386
bam
bigWig
918
bed narrowPeak
624
tsv
504
bigBed narrowPeak
377
fastq
207
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
172
tagAlign
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
876
Homo sapiens
Biosample type
879
tissue
429
primary cell
131
in vitro differentiated cells
80
cell line
7
stem cell
Organ
200
kidney
156
heart
132
pancreas
95
liver
66
connective tissue
65
adipose tissue
63
blood vessel
63
vasculature
53
eye
46
artery
38
brain
25
limb
25
musculature of body
20
lung
15
epithelium
12
nerve
9
spleen
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
784
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
138
GRCh38
100
hg19
Lab
588
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
4
audit script error
4
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
February, 2021
November, 2017
files.file_type!
bigWig
BIOSAMPLE
ASSAY
879 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
RNA microarray
DNase-seq
tissue
kidney
7
75
59
49
6
1
1
islet of Langerhans
42
65
32
7
4
3
1
4
liver
63
20
1
1
1
3
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
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