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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
3
ChIP-seq
2
total RNA-seq
1
RRBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
6
3D chromatin structure
3
DNA binding
3
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
3
control
Date released
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
May, 2019
Available data
57
bam
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
15
Homo sapiens
Biosample type
12
tissue
3
primary cell
Organ
288
pancreas
215
kidney
205
epithelium
159
heart
130
liver
71
vasculature
70
blood vessel
64
brain
55
eye
49
connective tissue
46
artery
26
adipose tissue
25
limb
20
lung
15
musculature of body
14
blood
14
bodily fluid
12
nerve
9
bone element
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
15
AMP
Genome assembly (visualization)
4
hg19
Lab
15
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
February, 2021
August, 2017
files.file_type!
bigWig
BIOSAMPLE
ASSAY
15 results
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Hi-C
ChIP-seq
total RNA-seq
RRBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
gastrocnemius medialis
4
1
psoas muscle
2
1
skeletal muscle tissue
1
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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