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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
114
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
158
DNA binding
116
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
45
transcription factor
43
narrow histone mark
42
broad histone mark
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
126
May, 2021
54
August, 2017
43
December, 2017
39
February, 2018
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
269
bam
237
bigWig
141
fastq
132
bed narrowPeak
109
tsv
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
328
Homo sapiens
Biosample type
1954
tissue
940
primary cell
554
cell line
328
in vitro differentiated cells
10
stem cell
Organ
75
connective tissue
29
embryo
21
epithelium
15
liver
1
adipose tissue
1
heart
Project
328
AMP
Genome assembly (visualization)
254
hg19
225
GRCh38
4
hg18
Lab
274
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
94
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
February, 2021
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
328 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
1
4
1
1
cardiomyocytes
59
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
neural progenitor cell
1
7
10
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