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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
21
single cell RNA-seq
10
ATAC-seq
3
Hi-C
Assay category
113
Transcription
10
DNA accessibility
3
3D chromatin structure
Date released
76
February, 2023
February, 2021
40
September, 2020
7
August, 2020
3
October, 2022
Available data
zippedFastqFolder
124
fastq
10
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
126
Homo sapiens
Biosample type
126
primary cell
Organ
66
epithelium
66
pancreas
Project
126
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3242
AMP-T2D consortium
343
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
126
Klaus Kaestner, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
month_released!
February, 2021
files.file_type!
zippedFastqFolder
assay_title!
whole genome sequencing assay
BIOSAMPLE
ASSAY
126 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
primary cell
pancreatic alpha cell
42
7
1
exocrine cell
39
Langerhans cell
21
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
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