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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
388
ChIP-seq
Assay category
388
DNA binding
Target of assay
319
histone
319
histone modification
174
narrow histone mark
145
broad histone mark
65
control
4
transcription factor
Date released
90
May, 2021
83
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
February, 2021
Available data
2817
bam
2614
bigWig
1791
bed narrowPeak
1310
fastq
1041
tsv
1039
bigBed narrowPeak
388
tagAlign
320
bed broadPeak
284
bigBed broadPeak
270
bed bed3+
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
382
Homo sapiens
Biosample type
237
tissue
99
primary cell
40
in vitro differentiated cells
12
cell line
Organ
118
brain
86
liver
22
connective tissue
18
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
1
pituitary gland
Project
304
AMP
84
T1D
Genome assembly (visualization)
239
GRCh38
231
hg19
Lab
304
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
inconsistent assembly
month_released!
February, 2021
files.file_type!
zippedFastqFolder
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
388 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
11
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
See all biosamples
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