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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
114
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
192
DNA binding
116
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
63
August, 2017
42
August, 2021
42
December, 2017
39
February, 2018
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
263
bam
232
bigWig
135
fastq
132
bed narrowPeak
109
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
362
Homo sapiens
Biosample type
2206
tissue
843
primary cell
553
cell line
362
in vitro differentiated cells
10
stem cell
Organ
84
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
362
AMP
Genome assembly (visualization)
266
hg19
238
GRCh38
4
hg18
Lab
308
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
97
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
February, 2021
files.file_type!
zippedFastqFolder
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
362 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
62
1
4
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
17
4
1
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