Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
114
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
131
DNA binding
116
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
215
bam
189
bigWig
109
tsv
89
bed narrowPeak
87
fastq
26
tagAlign
18
bed bed3+
16
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
300
Homo sapiens
Biosample type
1948
tissue
828
primary cell
566
cell line
300
in vitro differentiated cells
10
stem cell
Organ
29
embryo
24
epithelium
21
connective tissue
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
300
AMP
Genome assembly (visualization)
222
hg19
194
GRCh38
4
hg18
Lab
246
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
97
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
February, 2021
August, 2017
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
300 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
hepatocyte
15
+ See 31 more…
See all biosamples
Download