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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
8
Transcription
4
DNA accessibility
Date released
February, 2021
8
August, 2021
3
February, 2023
1
May, 2022
1
October, 2022
Available data
2077
bam
1879
bigWig
1794
bed narrowPeak
1070
fastq
1042
bigBed narrowPeak
390
tagAlign
322
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
265
tsv
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
13
txt
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
12
Homo sapiens
Biosample type
9
tissue
3
in vitro differentiated cells
1
cell line
Organ
8
kidney
1
musculature of body
Project
13
AMP
Genome assembly (visualization)
4
hg19
Lab
8
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
2
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
February, 2021
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
13 results
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single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
8
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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