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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
10
Transcription
4
DNA accessibility
Date released
February, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
2676
bam
2447
bigWig
1571
bed narrowPeak
1313
fastq
1025
tsv
938
bigBed narrowPeak
390
tagAlign
244
bed broadPeak
207
bigBed broadPeak
193
bed bed3+
153
zippedFastqFolder
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
15
txt
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
14
Homo sapiens
Biosample type
11
tissue
3
in vitro differentiated cells
1
cell line
Organ
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
15
AMP
Genome assembly (visualization)
4
hg19
Lab
6
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
February, 2021
organ_slims!
kidney
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
15 results
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total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
pubis
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
See all biosamples
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