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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
snATAC-seq
Assay category
67
Transcription
4
DNA accessibility
Date released
February, 2021
57
August, 2021
7
February, 2023
7
May, 2022
Available data
2813
bam
2572
bigWig
1748
bed narrowPeak
1306
fastq
1041
tsv
1036
bigBed narrowPeak
383
tagAlign
316
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
71
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
71
Homo sapiens
Biosample type
68
tissue
3
in vitro differentiated cells
Organ
57
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
71
AMP
Genome assembly (visualization)
4
hg19
Lab
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
5
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
tissue
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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