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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ATAC-seq
56
snATAC-seq
26
DNase-seq
Assay category
563
DNA binding
497
Transcription
351
DNA accessibility
72
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
70
August, 2021
60
February, 2023
60
May, 2022
55
May, 2020
February, 2021
23
June, 2019
16
January, 2021
16
May, 2021
15
October, 2019
11
May, 2023
10
April, 2020
7
August, 2020
3
September, 2020
1
August, 2017
1
August, 2022
1
July, 2019
1
March, 2019
1
October, 2017
Available data
122
bed narrowPeak
64
xls
60
zippedFastqFolder
35
bigWig
26
bam
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
23
bigBed narrowPeak
12
fastq
12
tsv
Organism
350
Homo sapiens
Biosample type
181
tissue
154
primary cell
16
cell line
Organ
93
pancreas
90
kidney
73
epithelium
38
heart
36
blood vessel
36
vasculature
35
artery
13
brain
10
lung
8
blood
8
bodily fluid
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
242
AMP
70
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
hg19
423
GRCh38
Lab
160
AMP-T2D consortium
81
Katalin Susztak, Upenn
70
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
22
inconsistent ontology term
1
audit script error
month_released!
February, 2021
lab.title!
Maike Sander, UCSD
assembly!
hg19
BIOSAMPLE
ASSAY
351 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
25
7
lung
10
pancreas
4
+ See 17 more…
primary cell
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
Langerhans cell
21
pancreatic beta cell
16
+ See 12 more…
cell line
EndoC_BH1
16
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