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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
Assay category
117
DNA binding
Target of assay
63
control
54
histone
54
histone modification
33
broad histone mark
21
narrow histone mark
Date released
47
August, 2017
23
May, 2020
21
November, 2017
9
October, 2019
8
August, 2021
8
October, 2017
February, 2021
1
May, 2021
Available data
2820
bam
bigWig
1754
bed narrowPeak
1313
fastq
1042
bigBed narrowPeak
1041
tsv
390
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
116
Homo sapiens
Biosample type
94
tissue
22
in vitro differentiated cells
1
primary cell
Organ
44
liver
36
brain
21
connective tissue
7
adipose tissue
5
pancreas
2
epithelium
2
musculature of body
Project
117
AMP
Genome assembly (visualization)
1
GRCh38
Lab
117
AMP-T2D consortium
Audit category:
1
missing controlled_by
month_released!
February, 2021
lab.title!
Maike Sander, UCSD
files.file_type!
bigWig
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
tissue
liver
43
brain
8
cingulate gyrus
8
subcutaneous abdominal adipose tissue
7
layer of hippocampus
4
+ See 15 more…
in vitro differentiated cells
adipocyte
14
neural progenitor cell
7
pancreatic PP cell
1
primary cell
hepatocyte
1
See all biosamples
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