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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
73
single cell RNA-seq
49
ATAC-seq
41
WGBS
21
snATAC-seq
3
Hi-C
Assay category
73
Transcription
70
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
February, 2021
43
September, 2020
7
August, 2020
3
October, 2022
Available data
153
zippedFastqFolder
32
fastq
10
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
187
Homo sapiens
Biosample type
187
primary cell
Organ
93
epithelium
93
pancreas
Project
187
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
2540
AMP-T2D consortium
228
Kyle Gaulton, UCSD
187
Klaus Kaestner, Upenn
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
month_released!
February, 2021
lab.title!
Maike Sander, UCSD
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
187 results
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single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
Hi-C
primary cell
Langerhans cell
73
21
pancreatic alpha cell
29
25
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
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