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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
382
ChIP-seq
Assay category
382
DNA binding
Target of assay
314
histone
314
histone modification
171
narrow histone mark
143
broad histone mark
64
control
4
transcription factor
Date released
90
May, 2021
78
November, 2017
77
August, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
February, 2021
Available data
2764
bam
2579
bigWig
1781
bed narrowPeak
1269
fastq
1032
bigBed narrowPeak
1026
tsv
382
tagAlign
319
bed broadPeak
283
bigBed broadPeak
265
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
hic
22
bedpe bed3+
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
375
Homo sapiens
Biosample type
230
tissue
100
primary cell
40
in vitro differentiated cells
12
cell line
Organ
118
brain
86
liver
22
connective tissue
19
pancreas
15
musculature of body
adipose tissue
7
epithelium
1
pituitary gland
Project
298
AMP
84
T1D
Genome assembly (visualization)
241
GRCh38
232
hg19
Lab
298
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
February, 2021
lab.title!
Maike Sander, UCSD
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
382 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
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