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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
10
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
73
DNA binding
13
Transcription
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
56
bam
43
fastq
39
bigWig
13
bed narrowPeak
13
tsv
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
101
Homo sapiens
Biosample type
100
tissue
2
primary cell
in vitro differentiated cells
Organ
910
pancreas
772
liver
468
epithelium
346
kidney
323
heart
274
brain
167
vasculature
161
blood vessel
138
connective tissue
113
limb
102
adipose tissue
94
musculature of body
73
artery
69
blood
69
bodily fluid
60
eye
42
nerve
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
102
AMP
Genome assembly (visualization)
40
hg19
38
GRCh38
Lab
102
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
February, 2020
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
4
1
1
2
subcutaneous adipose tissue
12
4
1
1
1
white adipose tissue
12
adipose tissue
2
1
3
3
1
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primary cell
mesenchymal stem cell of adipose
1
1
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