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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
105
total RNA-seq
17
ATAC-seq
1
DNase-seq
Assay category
146
DNA binding
105
Transcription
18
DNA accessibility
Target of assay
79
histone
79
histone modification
41
narrow histone mark
37
broad histone mark
37
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
54
August, 2017
43
December, 2017
39
February, 2018
37
August, 2021
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
269
bam
237
bigWig
141
fastq
132
bed narrowPeak
109
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
269
Homo sapiens
Biosample type
1455
tissue
606
primary cell
487
cell line
269
in vitro differentiated cells
3
stem cell
Organ
55
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
269
AMP
Genome assembly (visualization)
243
GRCh38
242
hg19
Lab
269
AMP-T2D consortium
Audit category:
83
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
February, 2021
September, 2020
BIOSAMPLE
ASSAY
269 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
1
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
hepatocyte
15
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