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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
46
ATAC-seq
41
WGBS
33
single cell RNA-seq
21
snATAC-seq
3
Hi-C
Assay category
109
Transcription
67
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
September, 2020
February, 2021
7
August, 2020
3
October, 2022
Available data
134
zippedFastqFolder
83
fastq
7
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
220
Homo sapiens
Biosample type
220
primary cell
Organ
127
epithelium
127
pancreas
Project
220
HPAP
Genome assembly (visualization)
7
GRCh38
3
hg19
Lab
2836
AMP-T2D consortium
269
Kyle Gaulton, UCSD
220
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
month_released!
February, 2021
September, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
220 results
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total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell
27
27
25
1
Langerhans cell
33
21
pancreatic beta cell
10
15
16
1
exocrine cell
39
pancreatic acinar cell
4
1
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