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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
5
DNase-seq
3
single cell RNA-seq
3
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
24
DNA binding
7
DNA accessibility
6
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
35
bam
28
bigWig
21
bed narrowPeak
14
bigBed narrowPeak
6
tsv
4
bed broadPeak
4
bigBed broadPeak
3
fastq
2
bed bed3+
1
hic
1
tar
Organism
38
Homo sapiens
Biosample type
36
primary cell
2
cell line
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
38
epithelium
30
kidney
26
artery
21
eye
21
pancreas
21
vein
8
heart
7
liver
5
connective tissue
4
gonad
4
ovary
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
38
AMP
Genome assembly (visualization)
30
hg19
26
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
pancreatic alpha cell
2
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cell line
glomerular visceral epithelial cell
1
1
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