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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
14
ATAC-seq
9
DNase-seq
7
WGBS
2
single cell RNA-seq
1
FAIRE-seq
Assay category
102
DNA binding
24
DNA accessibility
7
DNA methylation
2
Transcription
Target of assay
64
transcription factor
32
histone
32
histone modification
21
RNA binding protein
17
broad histone mark
16
recombinant protein
15
narrow histone mark
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
161
fastq
159
bam
152
bigWig
119
bed narrowPeak
87
bigBed narrowPeak
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
135
Homo sapiens
Biosample type
61
cell line
48
primary cell
26
tissue
Organ
53
liver
53
pancreas
35
epithelium
15
blood
15
bodily fluid
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
135
AMP
Genome assembly (visualization)
125
GRCh38
117
hg19
Lab
135
AMP-T2D consortium
Audit category:
35
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
February, 2021
files.file_type!
tsv
BIOSAMPLE
ASSAY
135 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic ductal cell
13
4
pancreatic acinar cell
8
3
pancreatic endocrine cell
11
pancreatic beta cell
4
pancreatic alpha cell
3
+ See 1 more…
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
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